Signature	pVal	Genes
DAVICIONI_MOLECULAR_ARMS_VS_ERMS_UP	7.39935499099e-05	GOSR1|TOM1L1|AMZ2|TLK2|TRIM37|CYB561|POLG2|TNFAIP1|NOTCH1|TEFM|TEX2|TBCD|NF1|B3GAT1|MTMR4|NPEPPS|GGNBP2
GCM_SMO	8.70258989855e-05	DHRS11|MKS1|STAT5B|RMND5B|FBXL20|SEMA4F|PIP4K2B
GSE3920_UNTREATED_VS_IFNA_TREATED_FIBROBLAST_DN	0.000690330655897	GPS1|PCGF2|ACACA|RUNDC1|MRPL38|EFTUD2|AATF|TEFM|DANCR|PEX12|MAFG
GSE5679_PPARG_LIGAND_ROSIGLITAZONE_VS_RARA_AGONIST_AM580_TREATED_DC_UP	0.000555433896787	CISD3|FOXK2|MIF4GD|PHB|CYB561|POLDIP2|COA3|CDC42EP4|SNF8|CENPX|SLC25A39
GSE11973_MIR223_KOVS_WT_BONE_MARROW_NEUTROPHIL_DN	0.000789580790339	UTP6|UNK|STAT3|CUEDC1|DYNLL2|UTP18|CCDC43|RHBDF2|AATF|PEX12
GSE17721_LPS_VS_GARDIQUIMOD_1H_BMDC_DN	0.000555433896787	BRCA1|ANKRD40|ZNF830|NBR1|MRPS23|TEFM|STAT5B|PNPO|CANT1|GOSR2|TEN1
GSE17721_POLYIC_VS_CPG_12H_BMDC_DN	4.29196557582e-05	MRPL12|PEX12|JMJD6|HNRNPDL|MRPS7|SRSF1|FASN|SLC25A10|ACLY|LRRC59|ATXN7L3|GHDC|APPBP2
GSE36392_TYPE_2_MYELOID_VS_NEUTROPHIL_IL25_TREATED_LUNG_DN	0.000133758430131	ZNHIT3|ANKRD40|MRPS7|SYNRG|KAT2A|CDC42EP4|NLE1|SEPT9|CENPX|ZMAT5|UBALD2|TOP2A
HOLLEMAN_ASPARAGINASE_RESISTANCE_ALL_DN	0.000901902223359	ZNHIT3|SUMO2|PSME3|UBE2Z
Human Bladder_Aaboe05_230genes (16265353-SuppTable1)	0.000192573139268	ERBB2|NARF|EXOC7|NME1-NME2|KPNB1|RETREG3|JUP|FASN|ACLY|KIAA0100|PSMB3
KEGG_PROTEASOME	7.74504352667e-05	PSMD11|PSME3|PSMD3|PSMD12|PSMB3|PSMC5
MENSSEN_MYC_TARGETS	0.000239570161612	BRCA1|HNRNPDL|PHB|NSF|EFTUD2|NME1
MIPS_PA700_20S_PA28_COMPLEX	0.000350374589628	PSMD11|PSMB3|PSMC5|PSMD3|PSMD12
MIPS_PA700_COMPLEX	0.000370319564705	PSMD11|PSMC5|PSMD3|PSMD12
MIPS_SWI_SNF_CHROMATIN_REMODELING_RELATED_BRCA1_COMPLEX	0.000811251037008	BRCA1|SMARCD2|SMARCE1
MIPS_TFTC_TYPE_HISTONE_ACETYL_TRANSFERASE_COMPLEX	0.000597801412751	MED1|MED13|KAT2A
MODULE_28	0.000226966565782	PSMD11|PSMB3|PSMC5|PSMD3|PSMD12
MODULE_91	0.000401058477211	PSMD11|PSMB3|PSMC5|PSMD3|PSMD12
Proteasome	0.000239570161612	PSMD11|PSME3|PSMD3|PSMD12|PSMB3|PSMC5
REACTOME_APC_C_CDC20_MEDIATED_DEGRADATION_OF_MITOTIC_PROTEINS	8.70258989855e-05	CDC27|ANAPC11|PSMD11|PSMD3|PSMD12|PSMB3|PSMC5
REACTOME_APC_C_CDH1_MEDIATED_DEGRADATION_OF_CDC20_AND_OTHER_APC_C_CDH1_TARGETED_PROTEINS_IN_LATE_MITOSIS_EARLY_G1	7.80400171815e-05	CDC27|ANAPC11|PSMD11|PSMD3|PSMD12|PSMB3|PSMC5
REACTOME_AUTODEGRADATION_OF_CDH1_BY_CDH1_APC_C	3.40119374525e-05	CDC27|ANAPC11|PSMD11|PSMD3|PSMD12|PSMB3|PSMC5
REACTOME_AUTODEGRADATION_OF_THE_E3_UBIQUITIN_LIGASE_COP1	0.000830036648985	PSMD11|PSMB3|PSMC5|PSMD3|PSMD12
REACTOME_CDK_MEDIATED_PHOSPHORYLATION_AND_REMOVAL_OF_CDC6	8.90292402254e-05	PSMD11|PSMD3|PSMD12|PSMB3|PSMC5|CDC6
REACTOME_CDT1_ASSOCIATION_WITH_THE_CDC6_ORC_ORIGIN_COMPLEX	0.000239570161612	PSMD11|PSMD3|PSMD12|PSMB3|PSMC5|CDC6
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [GoID:GO:0031146; evidenceTypes:IBA|IDA|IEA|IMP|ISS|TAS]	0.000998114364697	PSMD11|PSME3|PSMD3|PSMD12|PSMB3|PSMC5
Wnt signaling pathway, planar cell polarity pathway [GoID:GO:0060071; evidenceTypes:IBA|IC|IEA|IGI|IMP|ISS|NAS|TAS]	0.000482628773406	PSMD11|PSME3|PSMD3|PSMD12|MKS1|PSMC5|PSMB3|AP2B1
cellular hormone metabolic process [GoID:GO:0034754; evidenceTypes:EXP|IBA|IC|IDA|IEA|IMP|ISS|NAS|TAS]	0.000514971182516	FSHB|DHRS11|TSPOAP1|HSD17B8|STAT5B|MED1|STARD3|HSD17B1
cofactor biosynthetic process [GoID:GO:0051188; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	0.000303518940675	HSD17B8|COASY|ACACA|NFE2L1|CIAO1|DHFR2|FASN|PNPO|ACLY|SLC25A39|RSAD1
endopeptidase complex [GoID:GO:1905369; evidenceTypes:IBA|IDA|IEA|IMP|ISS|NAS]	0.000919411376017	PSMD11|PSME3|PSMD3|PSMD12|PSMB3|PSMC5
establishment of planar polarity [GoID:GO:0001736; evidenceTypes:IBA|IC|IEA|IGI|IMP|ISS|NAS|TAS]	0.000204284503947	IFT20|PSMD11|PSME3|PSMD3|PSMC5|MKS1|PSMD12|PSMB3|AP2B1
establishment of tissue polarity [GoID:GO:0007164; evidenceTypes:IBA|IC|IEA|IGI|IMP|ISS|NAS|TAS]	0.000204284503947	IFT20|PSMD11|PSME3|PSMD3|PSMC5|MKS1|PSMD12|PSMB3|AP2B1
estradiol 17-beta-dehydrogenase activity [GoID:GO:0004303; evidenceTypes:IDA|IEA|TAS]	0.000597801412751	HSD17B8|DHRS11|HSD17B1
hormone biosynthetic process [GoID:GO:0042446; evidenceTypes:IBA|IDA|IEA|IEP|IMP|ISS|NAS|TAS]	0.000145498654001	FSHB|DHRS11|TSPOAP1|HSD17B8|MED1|STARD3|HSD17B1
mitochondrial large ribosomal subunit [GoID:GO:0005762; evidenceTypes:IBA|IDA|ISS]	0.00029798740709	MRPL10|MRPL12|MRPL27|MRPL38|MRPL45|MRPL58
morphogenesis of a polarized epithelium [GoID:GO:0001738; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	0.000105480685217	IFT20|SLC9A3R1|PSMD11|PSME3|PSMD3|PSMC5|MKS1|PSMD12|PSMB3|AP2B1
negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle [GoID:GO:0051436; evidenceTypes:IBA|TAS]	1.82815898931e-05	CDC27|ANAPC11|PSMD11|PSME3|PSMD3|PSMD12|PSMB3|PSMC5
non-canonical Wnt signaling pathway [GoID:GO:0035567; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	0.000244671517145	PSMD11|PSME3|PSMD3|AP2B1|MKS1|CSNK1D|NLK|PSMD12|PSMB3|PSMC5
organellar large ribosomal subunit [GoID:GO:0000315; evidenceTypes:IBA|IDA|ISS]	0.00029798740709	MRPL10|MRPL12|MRPL27|MRPL38|MRPL45|MRPL58
peptidase complex [GoID:GO:1905368; evidenceTypes:IBA|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	0.000615522324619	ATXN7L3|PSMD11|PSME3|PSMD3|PSMD12|PSMB3|PSMC5
positive regulation of canonical Wnt signaling pathway [GoID:GO:0090263; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	0.000248039307848	PSME3|PSMD11|JUP|PSMD3|PSMD12|NLE1|CSNK1D|PSMB3|PSMC5
positive regulation of protein catabolic process [GoID:GO:0045732; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|IPI|ISS|NAS|TAS]	0.000569982304934	CDC27|PSMD11|PSME3|SUMO2|ANAPC11|GGA3|NSF|PSMD12|CSNK1D|PSMD3|PSMB3|PSMC5|SNF8
positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GoID:GO:2000060; evidenceTypes:IDA|IEA|IMP|ISS|NAS|TAS]	0.000108535163051	CDC27|ANAPC11|PSMD11|PSME3|PSMD3|PSMD12|PSMB3|PSMC5
positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition [GoID:GO:0051437; evidenceTypes:TAS]	2.84887367869e-05	CDC27|ANAPC11|PSMD11|PSME3|PSMD3|PSMD12|PSMB3|PSMC5
positive regulation of ubiquitin-protein transferase activity [GoID:GO:0051443; evidenceTypes:IBA|IDA|IEA|IGI|IMP|IPI|ISS|TAS]	0.000278622836946	CDC27|ANAPC11|PSMD11|PSME3|PSMD3|PSMD12|PSMB3|PSMC5
proteasome accessory complex [GoID:GO:0022624; evidenceTypes:IBA|IDA|IEA|ISS]	4.32021048035e-05	PSME3|PSMD11|PSMC5|PSMD3|PSMD12
proteasome complex [GoID:GO:0000502; evidenceTypes:IBA|IDA|IEA|ISS|NAS]	0.000845572655282	PSMD11|PSME3|PSMD3|PSMD12|PSMB3|PSMC5
proteasome regulatory particle [GoID:GO:0005838; evidenceTypes:IBA|IDA|IEA|IMP]	0.000451125267247	PSMD11|PSMC5|PSMD3|PSMD12
proteasome regulatory particle, lid subcomplex [GoID:GO:0008541; evidenceTypes:IBA|IMP]	0.000181378814651	PSMD11|PSMD3|PSMD12
protein deubiquitination [GoID:GO:0016579; evidenceTypes:IBA|IC|IDA|IEA|IMP|ISS|TAS]	5.83505980728e-05	BRCA1|RNF135|BECN1|FOXK2|PSMB3|PSME3|PSMD11|HGS|KAT2A|PSMD12|PSMD3|ATXN7L3|PSMC5|USP36|RHOT1
protein modification by small protein removal [GoID:GO:0070646; evidenceTypes:IBA|IC|IDA|IEA|IMP|ISS|TAS]	3.14858147616e-05	BRCA1|GPS1|BECN1|FOXK2|RNF135|PSMB3|PSME3|PSMD11|HGS|KAT2A|PSMD12|PSMD3|ATXN7L3|PSMC5|USP36|RHOT1
protein phosphatase binding [GoID:GO:0019903; evidenceTypes:IBA|IDA|IEA|IPI|ISS|NAS|TAS]	0.000945498347415	ERBB2|STAT3|CDC27|RPS6KB1|KAT2A|JUP|GRB2|MTMR4
regulation of cellular amino acid metabolic process [GoID:GO:0006521; evidenceTypes:IBA|IDA|IEA|IMP|NAS|TAS]	0.000405932088365	PSMD11|PSME3|PSMD3|PSMD12|PSMB3|PSMC5
regulation of establishment of planar polarity [GoID:GO:0090175; evidenceTypes:IBA|IC|IEA|IGI|IMP|ISS|NAS|TAS]	0.000549046929265	PSMD11|PSME3|PSMD3|PSMD12|MKS1|PSMC5|PSMB3|AP2B1
regulation of protein catabolic process [GoID:GO:0042176; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|IPI|ISS|NAS|TAS]	0.000401257153379	TLK2|CDC27|PHB|PSME3|SUMO2|ANAPC11|GGA3|NSF|HGS|CSNK1D|PSMD11|PSMD3|RPL23|PSMD12|PSMB3|PSMC5|SNF8
regulation of transcription from RNA polymerase II promoter in response to hypoxia [GoID:GO:0061418; evidenceTypes:IDA|IEA|IMP|ISS|TAS]	0.000253958067406	PSME3|PSMD11|NOTCH1|PSMD3|PSMD12|PSMB3|PSMC5
regulation of transferase activity [GoID:GO:0051338; evidenceTypes:IBA|IC|IDA|IEA|IEP|IGI|IMP|IPI|ISS|NAS|TAS]	0.000563680428901	PSMD3|DBF4B|CDC6|RPTOR|GPS1|VPS25|SLC9A3R1|ANAPC11|SMG8|RPL23|NF1|PSMC5|ERBB2|IGF1R|TRAF4|SPAG9|PSME3|HGS|PRKAR1A|MMD|DUSP14|CARD14|SOCS7|CDC27|PSMD11|PSMD12|TOM1L1|COX11|PSMB3|STRADA|GGNBP2
